Srinivasan
Parthasarathy
Associate
Professor Dept. of Computer Science and Engineering and Department of Biomedical
Informatics Office: 693 Dreese Lab |
Teaching
· CIS 885 slides: Fall 2009 (ppt)
· CIS
770 slides: Guest Lecture 2/19/01
· A
recent talk at the systems seminar
Research Interests
- Data
Mining (DM)
- Bioinformatics and Clinical Informatics (BIO)
- High Performance Computing (HPC)
- Network Science (NS)
- Database Systems (DB)
PhD Advisees
- Matthew Otey (PhD 2006, Google R&D Pittsburgh)
- Hui Yang (PhD 2006, San Francisco State University)
- Sameep Mehta (PhD 2006 (Co-advisor: R. Machiraju), IBM
India Research Labs)
- Michael Twa (PhD 2006 (Primary advisor: M. Bullimore),
University of Houston)
- Keith Marsolo (PhD 2007, Cincinnati Children’s Hospital
and U. Cincinnati)
- Amol Ghoting (PhD 2007, IBM T. J. Watson Research
Center)
- Chao Wang (PhD 2008, Yahoo! Applied Research Labs)
- Gregory Buehrer (PhD 2008, Microsoft Research – Live
Labs (Search))
- Sitaram Asur, (PhD 2009, Computing Innovation Fellow –
HP Laboratories)
- Duygu Ucar, (PhD 2009, Computing Innovation Fellow – U.
Iowa)
- Shirish Tatikonda (current)
- V. Satuluri (current)
- X. Yang (current)
- Y. Wang (current)
Selected Awards and
Honors
- IBM Faculty Award, 2007
- ACM SIGKDD Best Applications Paper Award, 2007
- Best of IEEE ICDM Selection, 2006
- OSU Lumley Award, 2005
- VLDB Best Paper Award, 2005
- Best of SIAM Data Mining Selection, 2005
- NSF CAREER Award, 2004
- DOE Early Career Principal Investigator Award, 2004
- SIAM Data Mining Best Paper Award, 2003
- IEEE Data Mining Best Applications Paper Award, 2002
- Ameritech Faculty Fellow, 2001
Selected Recent
Publications
- S. Tatikonda and S. Parthasarathy, Hashing Tree
Structured Data: Methods and Applications, to appear in the IEEE
International Conference on Data Engineering 2010 (DB, DM, HPC).
- S. Asur, S. Parthasarathy and D. Ucar. An Event-based Framework for
Characterizing the Evolutionary Behavior of Interaction Graphs,
to appear in ACM Transactions on KDD
2009 (NS, DM).
- Z. Zhang, B-C Ooi, S. Parthasarathy and A. Tung Similarity Search on Bregman
Divergence: Towards Non-Metric Indexing, Proceedings
of VLDB 2009 (DB, DM).
- S. Tatikonda and S. Parthasarathy, Mining Tree Structured Data On
Multicore Systems, Proceedings of VLDB 2009 (DM, HPC,
NS).
- D. Ucar, A. Beyer, S. Parthasarathy and C. T. Workman, Predicting
Functionality of Protein-DNA Interactions by Integrating Diverse Evidence, ISMB
2009 (BIO, DM).
- S. Asur and S. Parthasarathy, A Viewpoint-based
Approach for Interaction Graph Analysis, ACM
SIGKDD 2009 (NS, DM).
- V. Satuluri and S. Parthasarathy, Scalable Graph
Clustering Using Stochastic Flows: Applications to Community Discovery, ACM
SIGKDD 2009 (NS, DM).
- T. Q. Trung, C-Y. Chan and S. Parthasarathy, Query
By Output, ACM SIGMOD 2009 (DB).
- G. Buehrer, S. Parthasarathy and M. Goyder, Data
Mining on the Cell Processor, ACM
ICS 2008 (HPC, DM).
- X. Yang, S. Asur, S. Parthasarathy and S. Mehta, A
Visual-Analytic Toolkit for Dynamic Interaction Graphs, ACM SIGKDD 2008 (NS, DM).
- D. B. Larkins, J. Dinan, S. Krishnamoorthy, S.
Parthasarathy, A. Rountev, and P. Sadayappan, Global trees: A Framework
for Linked Data Structures on Distributed Memory Parallel Systems, Supercomputing (SC) 2008 (HPC).
- N. Wang, S. Parthasarathy, K-L Tan, A. Tung, CSV:
Visualizing and Mining Cohesive
Subgraphs, ACM SIGMOD 2008
(NS, DB, DM).
- A. Ghoting, S.
Parthasarathy and M. Otey, Fast
Mining of Distance Based Outliers in High-Dimensional Datasets, Data Mining and Knowledge Discovery
Journal, 2008 (DM).
- K. Marsolo and S. Parthasarathy, On the Use of
Structure and Sequence based features for Protein Classificaton and
Retrieval, Knowledge and
Information Systems Journal, 2008. Invited for fast-track submission as one of the best papers of
ICDM 2006 (BIO,DM).
- C. Wang, V. Satuluri, and S. Parthasarathy, Local
Probabilistic Models for Link Prediction, IEEE ICDM 2007 (NS, DM).
- S. Tatikonda, S. Parthasarathy and M. Goyder, LCS-TRIM:
Dynamic Programming Meets XML Indexing and Querying, VLDB 2007 (DB).
- S. Asur, D. Ucar and S. Parthasarathy, An Ensemble
Framework for Clustering Protein-Protein Interaction Networks, ISMB 2007 (BIO, NS, DM).
- G. Buehrer, S. Parthasarathy, S. Tatikonda, T. Kurc and
J. Saltz, Towards Terabyte Pattern Mining: An Architecture Conscious
Solution, ACM PPOPP 2007
(HPC, DM).
- A. Ghoting, G. Buehrer, S. Parthasarathy, D. Kim, A.
Nguyen, Y.Chen, and P. Dubey, Cache-Conscious Frequent Pattern Mining
on Modern and Emerging Processors, in International Journal on Very Large Data Bases, 16(1): 77-96
(2007). Earlier version of this article
- S. Asur, S. Parthasarathy and D. Ucar An Event-based
Framework for Characterizing the Evolutionary Behavior of Interaction
Graphs, In ACM SIGKDD 2007.
- D. Ucar, I. Neuhaus, P. R-Macdonald, C. Tilford, S.
Parthasarathy, N. Siemers, and R-R. Ji, Construction of a Reference
Gene Association Network from Multiple Profiling Data: Application to Data
Analysis, Bioinformatics 2007 (BIO,
NS, DM).
- K. Marsolo, M. Twa, M. Bullimore and S. Parthasarathy, Spatial
Modeling and Classification of Corneal Shape, IEEE Transactions on Information Technology in Biomedicine, 2007
(BIO, DM).