Srinivasan Parthasarathy
Professor Dept. of Computer Science and Engineering and Department of Biomedical Informatics
Office: 693 Dreese Lab |
Teaching
· CIS 885 slides: Fall 2009 (ppt)
· CSE 5243
· CSE 5249
Research Interests
- Data
Mining (DM)
- Bioinformatics and Clinical Informatics (BIO)
- High Performance Computing (HPC)
- Network Science (NS)
- Database Systems (DB)
PhD Advisees
- Matthew Otey (PhD 2006,
@Google R&D Pittsburgh)
- Hui Yang (PhD 2006, @San
Francisco State University)
- Sameep Mehta (PhD 2006
(Co-advisor: R. Machiraju), @IBM India Research
Labs)
- Michael Twa (PhD 2006
(Primary advisor: M. Bullimore), @University of
Houston)
- Keith Marsolo (PhD 2007,
@Cincinnati Children’s Hospital and U. Cincinnati)
- Amol Ghoting
(PhD 2007, @IBM T. J. Watson Research Center)
- Chao Wang (PhD 2008, @Yahoo! Applied Research Labs)
- Gregory Buehrer (PhD 2008,
Microsoft Research – Live Labs, now @Bing)
- Sitaram Asur,
(PhD 2009, @HP Research
Laboratories)
- Duygu Ucar,
(PhD 2009, @Stanford Genomics)
- Shirish Tatikonda
(PhD 2010, @IBM Almaden Research Center)
- V. Satuluri (PhD 2011,
@Twitter)
- X. Yang (PhD 2012 (forthcoming), accepted position
@Google)
- Y. Wang (current)
- S.M. Faisal (current)
- T. Clemons (current)
- Y-K Shih (current)
- Y. Ruan (current)
- D. Fuhry (current)
- Y. Zhang (current)
Selected Awards and
Honors
- IBM
Faculty Award, 2010
- OSU Lumley
Research Award, 2010
- Google Research
Award, 2009
- IBM Faculty Award,
2007
- ACM SIGKDD Best
Applications Paper Award, 2007
- Best of
IEEE ICDM Selection, 2006
- OSU Lumley Research
Award, 2005
- VLDB Best Paper
Award, 2005
- Best of
SIAM Data Mining Selection, 2005
- NSF CAREER Award,
2004
- DOE Early Career
Principal Investigator Award, 2004
- SIAM Data
Mining Best Paper Award, 2003
- IEEE Data
Mining Best Applications Paper Award, 2002
- Ameritech
Faculty Fellow, 2001
- Nominations
for Best Paper at KDD 2006, ISMB 2009, ACM BCB 2010
Selected Recent
Publications (2007-present)
1.
Y-K Shih and S. Parthasarathy,
Identifying functional modules in interaction networks via overlapping
Markov clustering, to appear in the proceedings of the European Conference
on Computational Biology (ECCB), 2012 (NS, BIO)
2.
V.
Satuluri and S. Parthasarathy,
Bayesian Locality Sensitive Hashing for Fast Similarity Search, to
appear in the Proceedings of VLDB 2012 (DB, DM).
3.
X.
Yang, A. Ghoting, Y. Ruan
and S. Parthasarathy, A Framework for Summarizing
and Analyzing Twitter Feeds, to appear, SIGKDD 2012 (DM, NS)
4. Y-K Shih and S. Parthasarathy, A Single-source K Shortest Paths Algorithm to Infer Regulatory Pathways in a Gene Network, to appear in ISMB 2012 (BIO)
5.
D.
Fuhry, Y. Ruan, S. Parthasarathy, Local vs. Global Term Analysis for
Understanding Community Differences in Social Networks, to appear in ACM Web Science 2012 (NS)
6.
Y.
Ruan, H. Purohit, D. Fuhry, S. Parthasarathy, A. Sheth, Prediction of Topic Volume on Twitter, to appear in ACM Web Science
2012 (NS)
7. Y. Zhang and S. Parthasarathy, Extracting, Analyzing, and Visualizing Triangle K-Core Motifs within Networks , in the Proceedings of the International Conference on Data Engineering (ICDE) 2012 (NS, DM).
8.
Y-K. Shih and S. Parthasarathy,
Scalable
Global Alignment for Multiple Biological Networks, in BMC Bioinformatics, Vol 12: S11, 2012. Earlier
version appeared in ACM Bioinformatics Conference 2011 (BIO).
9.
X.
Yang, S. Parthasarathy, and P. Sadayappan,
Fast Sparse Matrix-Vector Multiplication on GPUs: Implications for Graph
Mining, in the Proceedings of VLDB 2011 (HPC, NS, DM).
10. MD
Twa, S. Parthasarathy, CA
Johnson, MA Bullimore. Morphometric Analysis and
Classification of Glaucomatous Optic Neuropathy Using Radial Polynomials, J. Glaucoma. 2011
11. Srinivasan Parthasarathy, Yiye Ruan and Venu
Satuluri. "Community Discovery in Social
Networks: Applications, Methods and Emerging Trends", in Social
Network Data Analytics 2011. (NS, DM)
12. V. Satuluri,
S. Parthasarathy, and Y. Ruan,
Local Graph Sparsification for Scalable Clustering,
in SIGMOD 2011 (NS, DM).
13. V. Satuluri
and S. Parthasarathy, Symmetrizations
for Clustering Directed Graphs, in EDBT 2011 (NS, DM).
14. Y. Wang, S. Parthasarathy and S. Tatikonda, Locality
Sensitive Outlier Detection, in ICDE 2011 (DB, DM).
15. G. Orair,
C. Teixeira, Y. Wang, W. Meira, and S. Parthasarathy, Distance-Based Outlier Detection:
Consolidation and Renewed Bearing, in Proceedings of VLDB 2010 (DM, DB).
16. V.
Satuluri, S. Parthasarathy
and D. Ucar, Markov Clustering of Protein
Interaction Networks, in the Proceedings of ACM Bioinformatics 2010. (BIO,
DM)
17. S. Tatikonda
and S. Parthasarathy, Hashing Tree Structured
Data: Methods and Applications, in the proceedings of the IEEE
International Conference on Data Engineering 2010 (DB, DM, HPC).
18. S. Asur, S. Parthasarathy and D. Ucar. An Event-based Framework for Characterizing
the Evolutionary Behavior of Interaction Graphs, in ACM Transactions on KDD 2009 (NS, DM).
19. Z. Zhang, B-C Ooi, S. Parthasarathy and A.
Tung Similarity Search on Bregman Divergence: Towards Non-Metric Indexing, Proceedings
of VLDB 2009 (DB).
20. S. Tatikonda
and S. Parthasarathy, Mining Tree Structured Data
On Multicore Systems, Proceedings of VLDB 2009 (DM, HPC, NS).
21. D. Ucar,
A. Beyer, S. Parthasarathy and C. T. Workman, Predicting
Functionality of Protein-DNA Interactions by Integrating Diverse Evidence, ISMB
2009 (BIO, DM).
22. S. Asur
and S. Parthasarathy, A Viewpoint-based Approach
for Interaction Graph Analysis, ACM SIGKDD 2009 (NS, DM).
23. V. Satuluri
and S. Parthasarathy, Scalable Graph Clustering
Using Stochastic Flows: Applications to Community Discovery, ACM
SIGKDD 2009 (NS, DM).
24. T. Q. Trung,
C-Y. Chan and S. Parthasarathy, Query By Output, ACM
SIGMOD 2009 (DB).
25. G. Buehrer,
S. Parthasarathy and M. Goyder,
Data Mining on the Cell Processor, ACM
ICS 2008 (HPC, DM).
26. X. Yang, S. Asur, S. Parthasarathy and S.
Mehta, A Visual-Analytic Toolkit for Dynamic
Interaction Graphs, ACM SIGKDD 2008
(NS, DM).
27. D. B. Larkins,
J. Dinan, S. Krishnamoorthy,
S. Parthasarathy, A. Rountev,
and P. Sadayappan, Global trees: A Framework for Linked
Data Structures on Distributed Memory Parallel Systems, Supercomputing (SC) 2008 (HPC).
28. N. Wang, S. Parthasarathy, K-L Tan, A. Tung, CSV: Visualizing and Mining Cohesive Subgraphs, ACM
SIGMOD 2008 (NS, DB, DM).
29. A. Ghoting, S. Parthasarathy and M. Otey, Fast Mining of Distance Based Outliers in
High-Dimensional Datasets, Data
Mining and Knowledge Discovery Journal, 2008 (DM).
30. K. Marsolo
and S. Parthasarathy, On the Use of Structure and
Sequence based features for Protein Classificaton and
Retrieval, Knowledge and Information
Systems Journal, 2008. Invited for
fast-track submission as one of the best papers of ICDM 2006 (BIO,DM).
31. C. Wang, V. Satuluri, and S. Parthasarathy, Local
Probabilistic Models for Link Prediction, IEEE ICDM 2007 (NS, DM).
32. S. Tatikonda,
S. Parthasarathy and M. Goyder,
LCS-TRIM: Dynamic Programming Meets XML Indexing and Querying, VLDB 2007 (DB).
33. S. Asur,
D. Ucar and S. Parthasarathy,
An Ensemble Framework for Clustering
Protein-Protein Interaction Networks, ISMB
2007 (BIO, NS, DM).
34. G. Buehrer,
S. Parthasarathy, S. Tatikonda,
T. Kurc and J. Saltz, Towards
Terabyte Pattern Mining: An Architecture Conscious Solution, ACM PPOPP 2007 (HPC, DM).
35. A. Ghoting,
G. Buehrer, S. Parthasarathy,
D. Kim, A. Nguyen, Y.Chen, and P. Dubey,
Cache-Conscious Frequent Pattern Mining on Modern and Emerging Processors,
in International Journal on Very Large
Data Bases, 16(1): 77-96 (2007). Earlier version of this article
36. S. Asur,
S. Parthasarathy and D. Ucar
An Event-based Framework for Characterizing the Evolutionary Behavior of
Interaction Graphs, In ACM SIGKDD 2007.
37. D. Ucar,
I. Neuhaus, P. R-Macdonald, C. Tilford,
S. Parthasarathy, N. Siemers,
and R-R. Ji, Construction of a Reference Gene
Association Network from Multiple Profiling Data: Application to Data Analysis,
Bioinformatics 2007 (BIO, NS, DM).
38. K. Marsolo,
M. Twa, M. Bullimore and S.
Parthasarathy, Spatial Modeling and Classification
of Corneal Shape, IEEE Transactions
on Information Technology in Biomedicine, 2007 (BIO, DM).
39. Srinivasan Parthasarathy, Amol Ghoting, Matthew Eric Otey: A Survey of Distributed Mining of Data
Streams. Data Streams
- Models and Algorithms 2007: 289-307