Publications

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Journal Publications:

  1. HPC and Grid Computing for Integrative Biomedical Research
    Tahsin Kurc, Shannon Hastings, Vijay S. Kumar, Stephen Langella, Ashish Sharma, Tony Pan, Scott Oster, David Erwin, Justin Permar, Sivaramakrishnan Narayanan, Yolanda Gil, Ewa Deelman, Mary Hall and Joel Saltz
    In International Journal of High Performance Computing Applications, Special Issue dedicated to selected papers of the Workshop on Clusters and Computational Grids for Scientific Computing, August 2009.
    [PDF] [BibTeX]

  2. Analysis and Semantic Querying in Large Biomedical Image Datasets
    Vijay S. Kumar, Sivaramakrishnan Narayanan, Tahsin Kurc, Jun Kong, Metin Gurcan and Joel Saltz
    In IEEE Computer, Special Issue on Data-Intensive Computing, April 2008.
    [PDF] [BibTeX]

  3. Large-scale Biomedical Image Analysis in Grid Environments
    Vijay S. Kumar, Benjamin Rutt, Tahsin Kurc, Ümit Çatalyurek, Tony Pan, Sunny Chow, Stephan Lamont, Maryann Martone and Joel Saltz
    In IEEE Transactions on Information Technology in Biomedicine, Special Issue on Bio-Grid, March 2008.
    [PDF] [BibTeX]


Refereed Conference/Workshop Publications:

  1. An Integrated Framework for Parameter-based Optimization of Scientific Workflows
    Vijay S. Kumar, Tahsin Kurc, Gaurang Mehta, Karan Vahi, Varun Ratnakar, Jihie Kim, Ewa Deelman, Yolanda Gil, P. Sadayappan, Mary Hall and Joel Saltz

    To Appear in Proceedings of the ACM International Symposium on High Performance Distributed Computing (HPDC), June 2009. (Acceptance Rate: 19%)
    [PDF] [BibTeX] [Slides]

  2. Architectural Implications for Spatial Object Association Algorithms
    Vijay S. Kumar, Tahsin Kurc, Ghaleb Abdulla, Scott R. Kohn, Joel Saltz and Celeste Matarazzo

    Proceedings of the IEEE International Parallel & Distributed Processing Symposium (IPDPS), May 2009. (Acceptance Rate: 23%)
    [PDF] [BibTeX] [Slides]

  3. Designing and Parameterizing a Workflow for Optimization: A Case Study in Biomedical Imaging
    Vijay S. Kumar, Mary Hall, Jihie Kim, Yolanda Gil, Tahsin Kurc, Ewa Deelman and Joel Saltz

    Proceedings of the NSF Workshop on Next Generation Software (NSFNGS 2008), held in conjunction with IPDPS'08, April 2008.
    [PDF] [BibTeX] [Slides]

  4. Performance vs. Accuracy Trade-offs for Large-scale Image Analysis Applications
    Vijay S. Kumar, Tahsin Kurc, Jun Kong, Ümit Çatalyurek, Metin Gurcan and Joel Saltz

    Proceedings of IEEE Cluster 2007: Conference on Cluster Computing, September 2007.
    [PDF] [BibTeX] [Slides]

  5. Intelligent Optimization of Parallel and Distributed Applications
    Bhupesh Bansal, Umit Catalyurek, Jacqueline Chame, Chun Chen, Ewa Deelman, Yolanda Gil, Mary Hall, Vijay S. Kumar, Tahsin Kurc, Kristina Lerman, Aiichiro Nakano, Yoon-ju Lee Nelson, Joel Saltz, Ashish Sharma, Priya Vashishta

    Proceedings of the NSF Workshop on Next Generation Software (NSFNGS 2007), held in conjunction with IPDPS'07, March 2007.
    [PDF] [BibTeX] [Slides]

  6. Large Image Correction and Warping in a Cluster Environment
    Vijay S. Kumar, Benjamin Rutt, Tahsin Kurc, Ümit Çatalyurek, Sunny Chow, Stephan Lamont, Maryann Martone and Joel Saltz

    Proceedings of ACM/IEEE Conference on Supercomputing: Conference on High Performance Networking and Computing (SC06), November 2006. (Acceptance Rate: 23%)
    [PDF] [BibTeX] [Slides]

  7. Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying
    Benjamin Rutt, Vijay S. Kumar, Tony Pan, Tahsin Kurc, Ümit Çatalyurek, Yujun Wang and Joel Saltz

    Proceedings of IEEE International Conference on Cluster Computing (Cluster'05), September 2005. (Acceptance Rate: 32%) (Appeared in Outstanding Papers session)
    [PDF] [BibTeX] [Slides]

  8. Supporting Large Scale Medical and Scientific Datasets
    Umit Catalyurek, Shannon Hastings, Kun Huang, Vijay S. Kumar, Tahsin Kurc, Stephen Langella, Sivaramakrishnan Narayanan, Scott Oster, Tony Pan, Benjamin Rutt, Xi Zhang, Joel Saltz

    Proceedings of the International Conference on Parallel Computing: Current & Future Issues of High-End Computing (PARCO'05), September 2005.
    [PDF] [BibTeX] [Slides]

  9. A Runtime Framework for Partial Replication and its Application for On-Demand Data Exploration
    Sivaramakrishnan Narayanan, Ümit Çatalyurek, Tahsin Kurc, Vijay S. Kumar, Joel Saltz

    Proceedings of the High Performance Computing Symposium (HPC05), part of the Spring Simulation Multiconference, April 2005
    [PDF] [Slides]

  10. Design and Implementation of a Data Server using a Peer-to-peer Storage System
    Vijay S. Kumar, Tahsin Kurc, Ümit Çatalyurek, Joel Saltz

    Proceedings of the High Performance Computing Symposium (HPC05), part of the Spring Simulation Multiconference, April 2005
    [PDF] [Slides]