My research interests include, but not limited to, the following topics:
Onur Kucuktunc, M. Bastan, U. Gudukbay, O. Ulusoy, Bilkent University Multimedia Database Group at TRECVID 2008, Proceedings of the TREC Video Retrieval Evaluation (TRECVID), Gaithersburg, MD, November 17-18, 2008.
Content-based Video Copy Detection Using Multimodal Analysis, Master's Thesis, Bilkent University, Ankara, Turkey, 2009.
BilVideo: MPEG-7 Compliant Video Database Management System, MUSCLE Conference joint with VITALAS Conference (MCVC'08), Cannes, France, February 2008.
Onur Kucuktunc is a Ph.D. candidate in Computer Science and Engineering department at The Ohio State University, working with Umit V. Catalyurek.
He received his B.S. and M.S. degrees in Computer Engineering from Bilkent University, Ankara, Turkey in 2007 and 2009, respectively. During his masters, he worked on content-based video copy detection and visual similarity-based tag suggestion, participated in TRECVID'08.
Currently, his research interests include similarity and diversity search, sentiment analysis, opinion retrieval, and biclustering.
Querying co-regulated genes on diverse gene expression datasets via biclustering
The rapid development and increasing popularity of gene expression microarrays have resulted in a number of studies on the discovery of co-regulated genes. One important way of discovering such co-regulations is the query-based search, since gene coexpressions may indicate a shared role in a biological process. Although there are promising query-driven search methods and biclustering-based techniques to identify a subset of conditions, they fail to capture many genes that function in the same biological pathway due to sensitivity to noise, or simply because microarray datasets are fraught with spurious samples or samples of diverse origin. Currently, several successful methods utilize Pearson Correlation Coefficient (PCC) based gene expression analysis, but due to issues of scalability, computational complexity, and accuracy, the problem of rank aggregation of genes among diverse datasets remains open.
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